vermouth
vermouth.citation_parser
vermouth.dssp
vermouth.dssp.dssp
vermouth.edge_tuning
vermouth.ffinput
vermouth.file_writer
vermouth.forcefield
vermouth.geometry
vermouth.gmx
vermouth.gmx.gro
vermouth.gmx.itp
vermouth.gmx.itp_read
vermouth.gmx.rtp
vermouth.gmx.topology
vermouth.graph_utils
vermouth.ismags
vermouth.log_helpers
vermouth.map_input
vermouth.map_parser
vermouth.molecule
vermouth.parser_utils
vermouth.pdb
vermouth.pdb.pdb
vermouth.processors
vermouth.processors.add_molecule_edges
vermouth.processors.annotate_mut_mod
vermouth.processors.apply_posres
vermouth.processors.apply_rubber_band
vermouth.processors.attach_mass
vermouth.processors.average_beads
vermouth.processors.canonicalize_modifications
vermouth.processors.do_links
vermouth.processors.do_mapping
vermouth.processors.gro_reader
vermouth.processors.locate_charge_dummies
vermouth.processors.make_bonds
vermouth.processors.merge_all_molecules
vermouth.processors.merge_chains
vermouth.processors.name_moltype
vermouth.processors.pdb_reader
vermouth.processors.processor
vermouth.processors.quote
vermouth.processors.rename_modified_residues
vermouth.processors.repair_graph
vermouth.processors.set_molecule_meta
vermouth.processors.sort_molecule_atoms
vermouth.processors.tune_cystein_bridges
vermouth.processors.water_bias
vermouth.rcsu
vermouth.rcsu.contact_map
vermouth.rcsu.go_pipeline
vermouth.rcsu.go_structure_bias
vermouth.rcsu.go_utils
vermouth.rcsu.go_vs_includes
vermouth.selectors
vermouth.system
vermouth.truncating_formatter
vermouth.utils
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