vermouth.processors package¶
Submodules¶
- vermouth.processors.add_molecule_edges module
- vermouth.processors.annotate_idrs module
- vermouth.processors.annotate_mut_mod module
- vermouth.processors.apply_posres module
- vermouth.processors.apply_rubber_band module
ApplyRubberBand
ApplyRubberBand.selector
ApplyRubberBand.lower_bound
ApplyRubberBand.upper_bound
ApplyRubberBand.decay_factor
ApplyRubberBand.decay_power
ApplyRubberBand.base_constant
ApplyRubberBand.minimum_force
ApplyRubberBand.bond_type
ApplyRubberBand.bond_type_variable
ApplyRubberBand.domain_criterion
ApplyRubberBand.res_min_dist
ApplyRubberBand.res_min_dist_variable
ApplyRubberBand.run_molecule()
always_true()
apply_rubber_band()
are_connected()
build_connectivity_matrix()
build_pair_matrix()
compute_decay()
compute_force_constants()
make_same_region_criterion()
same_chain()
self_distance_matrix()
- vermouth.processors.attach_mass module
- vermouth.processors.average_beads module
- vermouth.processors.canonicalize_modifications module
- vermouth.processors.do_links module
- vermouth.processors.do_mapping module
- vermouth.processors.gro_reader module
- vermouth.processors.locate_charge_dummies module
- vermouth.processors.make_bonds module
- vermouth.processors.merge_all_molecules module
- vermouth.processors.merge_chains module
- vermouth.processors.name_moltype module
- vermouth.processors.pdb_reader module
- vermouth.processors.processor module
- vermouth.processors.quote module
- vermouth.processors.rename_modified_residues module
- vermouth.processors.repair_graph module
- vermouth.processors.set_molecule_meta module
- vermouth.processors.sort_molecule_atoms module
- vermouth.processors.tune_cystein_bridges module
- vermouth.processors.water_bias module
Module contents¶
Provides Processors, VerMoUTH’s work horses.