GenerateContactMap
GenerateContactMap.run_molecule()
GenerateContactMap.run_system()
atom2res()
do_contacts()
make_atom_map()
read_go_map()
GoProcessorPipeline
GoProcessorPipeline.prepare_run()
GoProcessorPipeline.run_system()
ComputeStructuralGoBias
ComputeStructuralGoBias.compute_go_interaction()
ComputeStructuralGoBias.contact_selector()
ComputeStructuralGoBias.run_molecule()
ComputeStructuralGoBias.run_system()
get_go_type_from_attributes()
VirtualSiteCreator
VirtualSiteCreator.add_virtual_sites()
VirtualSiteCreator.run_molecule()
VirtualSiteCreator.run_system()
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