vermouth.processors.pdb_reader module¶ Provides a processor that reads a PDB file. See also vermouth.pdb.pdb class vermouth.processors.pdb_reader.PDBInput(filename, exclude=(), ignh=False, modelidx=1)[source]¶ Bases: Processor Reads PDB files. filename¶ The filename to parse. Type: str exclude¶ A collection of residue names that should not be parsed and excluded from the final molecule(s) Type: collections.abc.Container[str] ignh¶ If True, hydrogens will be discarded from the input structure. Type: bool modelidx¶ The model number to parse/use. Type: int See also read_pdb(), PDBParser() run_system(system)[source]¶