vermouth.processors.pdb_reader module¶

Provides a processor that reads a PDB file.

See also

class vermouth.processors.pdb_reader.PDBInput(filename, exclude=(), ignh=False, modelidx=0)[source]¶

Reads PDB files.

filename¶

The filename to parse.

Type:	str

exclude¶

A collection of residue names that should not be parsed and excluded from the final molecule(s)

Type:	collections.abc.Container[str]

ignh¶

If True, hydrogens will be discarded from the input structure.

Type:	bool

modelidx¶

The model number to parse/use.

Type:	int

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