vermouth package¶
Subpackages¶
- vermouth.dssp package
- vermouth.gmx package
- vermouth.pdb package
- vermouth.processors package
- Submodules
- vermouth.processors.add_molecule_edges module
- vermouth.processors.annotate_mut_mod module
- vermouth.processors.apply_posres module
- vermouth.processors.apply_rubber_band module
- vermouth.processors.attach_mass module
- vermouth.processors.average_beads module
- vermouth.processors.canonicalize_modifications module
- vermouth.processors.do_links module
- vermouth.processors.do_mapping module
- vermouth.processors.go_vs_includes module
- vermouth.processors.gro_reader module
- vermouth.processors.locate_charge_dummies module
- vermouth.processors.make_bonds module
- vermouth.processors.merge_all_molecules module
- vermouth.processors.merge_chains module
- vermouth.processors.name_moltype module
- vermouth.processors.pdb_reader module
- vermouth.processors.processor module
- vermouth.processors.quote module
- vermouth.processors.rename_modified_residues module
- vermouth.processors.repair_graph module
- vermouth.processors.set_molecule_meta module
- vermouth.processors.sort_molecule_atoms module
- vermouth.processors.tune_cystein_bridges module
- Module contents
- Submodules
Submodules¶
- vermouth.citation_parser module
- vermouth.edge_tuning module
- vermouth.ffinput module
- vermouth.file_writer module
- vermouth.forcefield module
- vermouth.geometry module
- vermouth.graph_utils module
- vermouth.ismags module
- vermouth.log_helpers module
- vermouth.map_input module
- vermouth.map_parser module
- vermouth.molecule module
- vermouth.parser_utils module
- vermouth.selectors module
- vermouth.system module
- vermouth.truncating_formatter module
- vermouth.utils module
Module contents¶
VerMoUTH: The Very Modular Universal Transformation Helper
Provides functionality for creating MD topologies from coordinate files. Powers the CLI tool martinize2.