All modules for which code is available
- collections
- vermouth.citation_parser
- vermouth.dssp.dssp
- vermouth.edge_tuning
- vermouth.ffinput
- vermouth.file_writer
- vermouth.forcefield
- vermouth.geometry
- vermouth.gmx.gro
- vermouth.gmx.itp
- vermouth.gmx.itp_read
- vermouth.gmx.rtp
- vermouth.graph_utils
- vermouth.ismags
- vermouth.log_helpers
- vermouth.map_input
- vermouth.map_parser
- vermouth.molecule
- vermouth.parser_utils
- vermouth.pdb.pdb
- vermouth.processors.add_molecule_edges
- vermouth.processors.annotate_mut_mod
- vermouth.processors.apply_posres
- vermouth.processors.apply_rubber_band
- vermouth.processors.attach_mass
- vermouth.processors.average_beads
- vermouth.processors.canonicalize_modifications
- vermouth.processors.do_links
- vermouth.processors.do_mapping
- vermouth.processors.go_vs_includes
- vermouth.processors.gro_reader
- vermouth.processors.locate_charge_dummies
- vermouth.processors.make_bonds
- vermouth.processors.merge_all_molecules
- vermouth.processors.merge_chains
- vermouth.processors.name_moltype
- vermouth.processors.pdb_reader
- vermouth.processors.processor
- vermouth.processors.quote
- vermouth.processors.rename_modified_residues
- vermouth.processors.repair_graph
- vermouth.processors.set_molecule_meta
- vermouth.processors.sort_molecule_atoms
- vermouth.processors.tune_cystein_bridges
- vermouth.selectors
- vermouth.system
- vermouth.truncating_formatter
- vermouth.utils