Welcome to VerMoUTH’s documentation!

Contents:

• General Overview
  • Installation instructions
  • Quickstart
  • General layout
  • Citing
  • References
• Martinize 2 workflow
  • Pipeline
  • 1) Read input files
  • 2) Repair the input graph
  • 3) Resolution transformation
  • 4) Apply Links
  • 5) Post processing
  • 6) Write output
• Technical background
  • Processor
  • Data
  • Graph algorithms
• File formats
  • .ff file format
  • .mapping file format
• Tutorials
  • Atomistic protein in solution
  • Coarse-grained protein in solution
  • Transmembrane protein
  • PAMAM: a hyperbranched polymer
  • A glycosylated protein
  • Adding new residues and links
  • Adding new modifications
• vermouth
  • vermouth package

Indices and tables

• Index
• Module Index
• Search Page