General Overview

How, what, why

Vermouth versus Martinize 2

Installation instructions

How to install vermouth and martinize2

pip install vermouth

Quickstart

How to run Martinize 2 for the simple cases

General layout

Processors, Blocks, Links, Modifications, Force fields, Mappings

Citing

A publication for vermouth and martinize 2 is currently being written. For now, please cite the relevant chapter from the thesis of Peter C Kroon:

Kroon, P.C. (2020). Martinize 2 – VerMoUTH. Aggregate, automate, assemble (pp. 16-53). ISBN: 978-94-034-2581-8.