General Overview¶
How, what, why
Vermouth versus Martinize 2
Installation instructions¶
How to install vermouth and martinize2
pip install vermouth
Quickstart¶
How to run Martinize 2 for the simple cases
General layout¶
Processors, Blocks, Links, Modifications, Force fields, Mappings
Citing¶
A publication for vermouth and martinize 2 is currently being written. For now, please cite the relevant chapter from the thesis of Peter C Kroon:
Kroon, P.C. (2020). Martinize 2 – VerMoUTH. Aggregate, automate, assemble (pp. 16-53). ISBN: 978-94-034-2581-8.