General Overview ================ How, what, why Vermouth versus Martinize 2 Installation instructions ------------------------- How to install vermouth and martinize2 .. code-block:: bash pip install vermouth Quickstart ---------- How to run Martinize 2 for the simple cases General layout -------------- Processors, Blocks, Links, Modifications, Force fields, Mappings Citing ------ A publication for vermouth and martinize 2 is currently being written. For now, please cite the relevant chapter from the thesis of Peter C Kroon: Kroon, P.C. (2020). Martinize 2 -- VerMoUTH. *Aggregate, automate, assemble* (pp. 16-53). ISBN: 978-94-034-2581-8.