Welcome to VerMoUTH’s documentation!

Contents:

• General Overview
  • Installation instructions
  • Quickstart
  • General layout
  • Citing
• Martinize 2 workflow
  • Pipeline
  • Important command line options
• Technical background
  • Processors
  • Data
  • Graph algorithms
• File formats
  • .ff file format
  • .mapping file format
• Tutorials
  • Atomistic protein in solution
  • Coarse-grained protein in solution
  • Transmembrane protein
  • PAMAM: a hyperbranched polymer
  • A glycosylated protein
  • Adding new residues and links
  • Adding new modifications
• vermouth
  • vermouth package

Indices and tables

• Index

• Module Index

• Search Page