vermouth.pdb package

Submodules

• vermouth.pdb.cif module
  • CIFReader
    • CIFReader.reader()
  • casting()
  • cif_entry_reader()
  • read_cif_file()
• vermouth.pdb.pdb module
  • PDBParser
    • PDBParser.active_molecule
    • PDBParser.molecules
    • PDBParser.modelidx
    • PDBParser.anisou()
    • PDBParser.atom()
    • PDBParser.author()
    • PDBParser.caveat()
    • PDBParser.cispep()
    • PDBParser.compnd()
    • PDBParser.conect()
    • PDBParser.cryst1()
    • PDBParser.dbref()
    • PDBParser.dbref1()
    • PDBParser.dbref2()
    • PDBParser.dispatch()
    • PDBParser.do_conect()
    • PDBParser.end()
    • PDBParser.endmdl()
    • PDBParser.expdta()
    • PDBParser.finalize()
    • PDBParser.formul()
    • PDBParser.header()
    • PDBParser.helix()
    • PDBParser.het()
    • PDBParser.hetatm()
    • PDBParser.hetnam()
    • PDBParser.hetsyn()
    • PDBParser.jrnl()
    • PDBParser.keywds()
    • PDBParser.link()
    • PDBParser.master()
    • PDBParser.mdltyp()
    • PDBParser.model()
    • PDBParser.modres()
    • PDBParser.mtrix1()
    • PDBParser.mtrix2()
    • PDBParser.mtrix3()
    • PDBParser.nummdl()
    • PDBParser.obslte()
    • PDBParser.origx1()
    • PDBParser.origx2()
    • PDBParser.origx3()
    • PDBParser.parse()
    • PDBParser.remark()
    • PDBParser.revdat()
    • PDBParser.scale1()
    • PDBParser.scale2()
    • PDBParser.scale3()
    • PDBParser.seqadv()
    • PDBParser.seqres()
    • PDBParser.sheet()
    • PDBParser.site()
    • PDBParser.source()
    • PDBParser.splt()
    • PDBParser.sprsde()
    • PDBParser.ssbond()
    • PDBParser.ter()
    • PDBParser.title()
  • get_not_none()
  • read_pdb()
  • write_pdb()
  • write_pdb_string()

Module contents

Provides functionality to read and write PDB files.